SE2620287

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7255
  • Oryza sativa
  • SE2620287
  • Mutator
  • M52
  • Chr08:21480766-21481508
  • GAGAAATTT
  • GAGAAATTTCCTTCTATACCCCTGAATGTTTAACCAATCCCTTCTATCCCTATGAGTTTTGTCCATTTTCTTGTATGCCCCTGAATTTTGGTTTTGATCCCTTTCATACCCATTCAATTAGTTGACCGTTATTTGAATGTTTAATTCCTATGAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
      T  C   CT  A   C    TG    A  A           CC  A        G C     T          C              T    C           ATT AA        C     T    A        TCC   -     TGACCA          --AC  A   A    -  C    -TA      ACTA                    T  T      ATATAA  C   T          T   A       -   T   ------AT    GACAAAGTTTATTTTTACATAATGACATAAAAACTAATATTTATTTACTTATTAAAAGATTATATGTAGCATTTTTTTATGGTAGTT
GAGAAA TT CTT  AT CCC TGAA  TTTA CC ATCCCTTCTAT  CT TGAGTTTT T CATTT CTTGTATGCC CTGAATTTTGGTTT GATC CTTTCATACCC   C  TTAGTTGA CGTTA TTGA TGTTTAAT   TAT GAAAA      TTTTGCCCTT    AC TGA GGAA AT TGGA   TTGTAG    GCTATATTGTTGGAAGTGTA AA TTTGTT      GA TAT ATATTCATGA TTT TTGTACA AGG ATT        TCAT                                                                                       
|||||| || |||  || ||| ||||  |||| || |||||||||||  || |||||||| | ||||| |||||||||| |||||||||||||| |||| |||||||||||   |  |||||||| ||||| |||| ||||||||   ||| |||||      ||||||||||    || ||| |||| || ||||   ||||||    |||||||||||||||||||| || ||||||      || ||| |||||||||| ||| ||||||| ||| |||        ||||                                                                                       C
CTCTTT AA GAA  TA GGG ATTT  AAAT GG TAGGGAAGATA  GA ACTTAAAA A GTGAG GAACATATGG GACTTAAAACTAAA CTAG GAAGGTATGGG   G  AGTTAACT GCGAT AACT GTAAATTA   ATA CTTTT      AAAACGGGAA    TG ACT CCTT TA ATCT   AACATT    TGATATAACAACCTTCGTAT TT AAATAA      CT ATA TATAAGTATT GAA AACATGT TCT TAA        ATAA                                                                                       
      T  A   AT  C   A    TA    C  C           CA  G        G A     C          A              C    A           AAC GC        A     C    G        TCC   T     -CAATC          GTTA  C   -    A  C    TTA      ----                    C  T      --CACA  A   T          C   C       A   T   AATTATTT    TTTTTCATACACATCGTAAAAGAAATTTAGTATTTGTATCAAAACTTTTCGTAAGGATATATTATATATCCTGTCCTTTTTTTATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End