Plant MITE

SE2620288

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7256
Oryza sativa
SE2620288
Mutator
M53
Chr08:23256109-23256401
GGGAGTAGC
GGA

Secondary structure and sequence

TSD TIR

5'

3'

G   GTAG                    TTTT  -A      A         GTAACTACTATATAAA     T  AACTACTATGTAACTCGAGTGTAACTCAAAAAAGCACGCCGGAGCAACTGGTTAGCTGGACAAACCTCTAAGTTGG
 GGA    CTATACAACTGTCGACAGTT    GG  TGAAAA CTTTCAAAT                TACAT GT                                                                            
 |||    ||||||||||||||||||||    ||  |||||| |||||||||                ||||| ||                                                                            A
 CCT    GATATGTTGACAGCTGTCAA    CC  ACTTTT GAAAGTTTA                GCAGA TT                                                                            
G   AAAA                    TTGT  AC      -         ---------AAATTCA     -  ATACGAAACTCTAAACACGATCACTTCATTTTCCCCTTTTTTAGTCTGCGTACGTCGTCCCTAGTTTGGGTTGTGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620288

GGGAGTAGCTATACAACTGTCGACAGTTTTTTGGATGAAAAACTTTCAAATGTAACTACTATATAAATACATTGTAACTACTATGTAACTCGAGTGTAACTCAAAAAAGCACGCCGGAGCAACTGGTTAGCTGGACAAACCTCTAAGTTGGAGGTGTTGGGTTTGATCCCTGCTGCATGCGTCTGATTTTTTCCCCTTTTACTTCACTAGCACAAATCTCAAAGCATATTAGACGACTTAAAATTTGAAAGTTTTCACACCTGTTAACTGTCGACAGTTGTATAGAAAATCCG

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