Plant MITE

SE2620289

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7257
Oryza sativa
SE2620289
Mutator
M53
Chr05:6927008-6927300
GGTATTGTT
GGTATTGTTAAAAAACTGT

Secondary structure and sequence

TSD TIR

5'

3'

   T      -          CACAT      T   CAAA             G                         CTACAAT           A ----   TACATTGTAACTACAGTGTAATTGCACTGTAACTATATTGTAATCTCT
 GG ATTGTT AAAAAACTGT     GTTTTT GGG    AAAACTTTCAAAT TAACTGTAGTATAGTTGTAGTATAA       GTAATTACACT T    AGT                                                
 || |||||| ||||||||||     |||||| |||    ||||||||||||| |||||||||||||||||||||||||       ||||||||||| |    |||                                                 
 CC TGATAG TTTTTTGACG     CAAAAA TCC    TTTTGAAAGTTTA ATTGATATTATATTAACATTATATT       TGATATTGATA T    GAA                                                
C  -      A          ACATT      T   ----             G                         ---AATT           - TATA   CATACATTCATAATTTTATTATATACGTTGAAATATAGATTTAATATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620289

GGTATTGTTAAAAAACTGTCACATGTTTTTTGGGCAAAAAAACTTTCAAATGTAACTGTAGTATAGTTGTAGTATAACTACAATGTAATTACACTATAGTTACATTGTAACTACAGTGTAATTGCACTGTAACTATATTGTAATCTCTATATAATTTAGATATAAAGTTGCATATATTATTTTAATACTTACATACAAGATATTATAGTTATAGTTTAATTATATTACAATTATATTATAGTTAGATTTGAAAGTTTTCCTTAAAAACTTACAGCAGTTTTTTAGATAGTCCC

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