SE2620290

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7258
  • Oryza sativa
  • SE2620290
  • Mutator
  • M54
  • Chr01:22749925-22750293
  • GGATTTTCT
  • ATTTTCTACACCTAGGTGCCATGACACCTA

Secondary structure and sequence

TSD    TIR
5'



3'
GG         AC            A      TCATT   A    --ACTC           GA       GAAA      -A    C  C             C   --T       CA        T A  C         T   ACCA                   ----   A -  C   AATAG
  ATTTTCTAC  CTAGGTGCCATG CACCTA     TAT TATG      AAATAGTTATA  GAAAATT    AAAATT  GTAA AT GTTTGTGATGATA AAG   TTATGCA  AACATGCA G CT AATTTGATC ATG    GAGAAACAAAAATAATAAA    ATC G AC GTG     
  |||||||||  |||||||||||| ||||||     ||| ||||      |||||||||||  |||||||    ||||||  |||| || ||||||||||||| |||   |||||||  |||||||| | || ||||||||| |||    |||||||||||||||||||    ||| | || |||     T
  TAAAAGATG  GATCCACGGTAC GTGGAT     ATA GTAC      TTTGTCAATAT  TTTTTAA    TTTTAA  TATT TA CAGGTACTATTAT TTC   GATACGT  TTGTACGT C GA TTAAGCTAG TAT    TTCTTTGTTTTTATTATTT    TAG C TG CAC     
CA         GT            C      -CCAC   C    ATTACA           -A       AATA      AC    C  T             A   TGT       --        T A  T         C   ATAC                   AAAA   A G  A   GCCCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End