SE2620291

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7259
  • Oryza sativa
  • SE2620291
  • Mutator
  • M55
  • Chr02:29180533-29181093
  • GAGTAAATT
  • AGTAAATTTCACATTAGGCCACAAATTTTGACCAAGATTTTATAATAGGCTAGGGTTAAATCAATGTTTTCACTTAACACCATACATCTTTACATAAGTTTTCAGTTTGGACTAGGGGTGAGCA

Secondary structure and sequence

TSD    TIR
5'



3'
G               AG    CAA            A    A    A  CT                                 C      A   A    TT  G            G      -------AA       A - -  ---   AAAACTTCATATGATTTACACATGGATAATTATAAAAGGCAAAACATTTTATGTTTTCTTCCTTCTTTTTAGTGTGAGTGGTAATTAACTATTTTTTATTTTATTTTTATTCATTTGCCCCTATGTATAGATC
 AGTAAATTTCACATT  GCCA   ATTTTGACCAAG TTTT TAAT GG  AGGGTTAAATCAATGTTTTCACTTAACACCATA ATCTTT CAT AGTT  CA TTTGGACTAGGG TGAGCA         GCATGGG A T GT   GAG                                                                                                                                     
 |||||||||||||||  ||||   |||||||||||| |||| |||| ||  ||||||||||||||||||||||||||||||||| |||||| ||| ||||  || |||||||||||| ||||||         ||||||| | | ||   |||                                                                                                                                     A
 TCATTTAAAGTGTAA  TGGT   TAAAACTGGTTT AAAG GTTA CC  TCCCGGTTTGGTTATAAAAGTGAATTGTGGTGT TAGAAA GTG TCAA  GT AAACCTGATCCC ACTCGT         TTCAACA G C CT   CGA                                                                                                                                     
                CG    ATA            C    C    C  AT                                 A      C   A    CC  G            A      GTAATTATC       - T T  TTT   TCAAGTTTATTAGTAAAATCAAGGTACCATAATTCTATTTATTGAAATCTTTCTTTATCGTTTAGTGTTTTGTTGAAAAAAGTCGTGCAGTGTGATTTTATTACTACGGTTATACAAATTTTCACCGTGTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End