SE2620293

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7261
  • Oryza sativa
  • SE2620293
  • Mutator
  • M57
  • Chr03:11756706-11757184
  • GAGTCAATC
  • GAGTCAATCCATTTTATGACATCGACAAAACGCGGGTTCTACAATATGCCACTGACAAAACTCAGTTC

Secondary structure and sequence

TSD    TIR
5'



3'
    TC             A   C      A  C      T           C   C   A        CACAC                 CA                      A           -----------CG C     A  AT        A C             CATAAAATT  -      GCATAA  - CATATCGCGGTAAAAAAATCTTGGATGATAAAAAGACAAGCAATTTCAAT
 GAG  AATCCATTTTATG CAT GACAAA CG GGGTTC ACAATATGCCA TGA AAA CTCAGTTC     TATACCATCGAATGACT  TTTTCTTCCTTATATGCCATCG CGTTAGTCAAC             C GTTAA AG  GAAAAATG C ATTTTACCCCTAG         GA GATTTT      TG C                                                  
 |||  ||||||||||||| ||| |||||| || |||||| ||||||||||| ||| ||| ||||||||     |||||||||||||||||  |||||||||||||||||||||| |||||||||||             | ||||| ||  |||||||| | |||||||||||||         || ||||||      || |                                                   
 CTC  TTAGGTAAGATAC GTA CTGTTT GT CCTAAG TGTTATATGGT ACT TTT GAGTCAAG     ATATGGTAGCTTGTTGA  AAAAGAAGGAATGTACGGTAGC GCGGTCAGTTG             G CAATT TC  TTTTTTAC G TAAAATGGGGATC         CC TGCTAC      GT G                                                  
T   TA             G   A      C  A      T           A   A   C        ATATT                 TG                      G           TCAATCAGTTTAA A     C  GT        A A             ---------  A      ------  A GAGTAGCTAAAGTGACTAGTACTAAGTGATAAATAAGAGTAACTACTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End