SE2620294

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7262
  • Oryza sativa
  • SE2620294
  • Mutator
  • M58
  • Chr05:8356047-8356578
  • GGCAGAATA
  • GGCAGAATAGCTA

Secondary structure and sequence

TSD    TIR
5'



3'
   C          CTTTA              T CGTA      G        C   C      A  G       G  A     A  C   A    AA  C  A  -      A    GT           A      A               C    --              A   A                  CT          A        ---TAT         TTAGACATAACCATAG    -   ATACTCATCCTTTTTTTTC
 GG AGAATAGCTA     GTCCCTAAAGTTTC C    GGATCA TTTAGTCC TAA CTTTTA AT GTTCAAA AA TCCTT AA TTT TCAT  GG CT GA ATAGTC TTGG  CCACCAAAATC TCATAT GATATGCCATGTCAT ATTC  ATGCAAAATCTATG TGA TTGTCCAATTTACTCTTA  TATATCATAG AAAATAAA      AAGGGTGAA                GAAA AAA                   
 || ||||||||||     |||||||||||||| |    |||||| |||||||| ||| |||||| || ||||||| || ||||| || ||| ||||  || || || |||||| ||||  ||||||||||| |||||| ||||||||||||||| ||||  |||||||||||||| ||| ||||||||||||||||||  |||||||||| ||||||||      |||||||||                |||| |||                   A
 CC TCTTATCGGT     CAGGGATTTCAAAG G    CCTAGT AAATCAGG ATT GAAAGT TA CAAGTTT TT AGGAA TT AAA AGTG  CC GA CT TATCAG AACC  GGTGGTTTTAG GGTGTA CTGTACGGTACAGTA TAAG  TACGTTTTAGATAT ATT AACAGGTTAAATGGGAAT  ATATAGTATC TTTTATTT      TTTCCATTT                ATTC CGT                   
C  -          TATAC              C AAGA      A        A   A      A  A       G  C     A  A   C    CA  C  -  A      G    AG           C      C               -    GA              -   A                  AT          G        TTCTGT         -------------TAC    T   TTTCATATGGAGTTTTGCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End