SE2620296

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7264
  • Oryza sativa
  • SE2620296
  • Mutator
  • M60
  • Chr01:21273859-21274387
  • GAAAATTGC
  • GAAAATTGCAAAAACCAACCCATAAATCACTTGAAGTTTGACATTCCACCTCATAAGTTATTTTGTTGCAAATGTCCACCCACCTACTAATTTTTTATGTAAAAACCACCCCAGTAAACATATGCTTAACCGAATCAATATGTTTTC

Secondary structure and sequence

TSD    TIR
5'



3'
        C        A                           C                                CC  C     AAT    TA              C   AA            C       ATA    T  -ATAAA     -----   - A    TGTGGTTTTTACTAAAATTAAATACTTCTAGAGTATTCTTGATATTTTTTTTGGTGAGACTCCACAAATAAAATTGCAGACGAGAGCTTAAACGTC
GAAAATTG AAAAACCA CCCATAAATCACTTGAAGTTTGACATT CACCTCATAAGTTATTTTGTTGCAAATGTCCA  CA CTACT   TTTT  TGTAAAAACCACCC AGT  ACATATGCTTAA CGAATCA   TGTT TC      GTGTG     AGT G TTAA                                                                                                
|||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||||   ||||  |||||||||||||| |||  |||||||||||| |||||||   |||| ||      |||||     ||| | ||||                                                                                                 
CTTTTAAC TTTTTGGT GGGTATTTAGTGAACTTTAAACTGTAA GTGGGGTATTCAGTAAAACAACGTTTATGGGT  GT GATGA   AAAA  ACGTTTTTGGTGGG TTA  TGTATATGAATT GTTTAGT   ATAA AG      CATAC     GAA C CGAT                                                                                                
        A        G                           A                                -A  A     ATC    CA              A   CG            A       CAA    T  CGACTA     CAATA   T -    TCGATCGGTTCAGTTATAACAGGTTCACAAACGTAATCTGAAATAAAAGGTATAAACTAACTTGAAAAAAAAAGTATATCGCTTTGAGTCACGCTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End