Plant MITE

SE2620297

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7265
Oryza sativa
SE2620297
Mutator
M61
Chr02:26626876-26627045
GAGCAATGC
GAGCAATGCTACACGTACTAAATTTTTCTTACTAAATTTTTACTAACA

Secondary structure and sequence

TSD TIR

5'

3'

    C  T    C         A                          ATCATCTCAA    --   ATTTAAGTAGATGGAAGTTACAA
 GAG AA GCTA ACGTACTAA TTTTTCTTACTAAATTTTTACTAACA          CCAT  TTG                       
 ||| || |||| ||||||||| ||||||||||||||||||||||||||          ||||  |||                        
 CTT TT CGAT TGTATGATT AAAAAGAATGATTTAAGAATGATTGT          CTAC  AGT                       
C   -  C    A         G                          --------GA    AC   ACGATACTCACGTAGATCTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620297

GAGCAATGCTACACGTACTAAATTTTTCTTACTAAATTTTTACTAACAATCATCTCAACCATTTGATTTAAGTAGATGGAAGTTACAAAAAATCTAGATGCACTCATAGCATGACACATCAGTGTTAGTAAGAATTTAGTAAGAAAAAGTTAGTATGTATAGCCTTTTCC

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