SE2620299

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7267
  • Oryza sativa
  • SE2620299
  • Mutator
  • M63
  • Chr04:13044349-13044973
  • GAGATAATC
  • GAGATAATCCCTTATATGTCACTAGAATTTAACCAGTTCCCCTGTATGCCACTCAAAATAGGCTTCTCCCTTATATGCCACTAGTTCAAGTTTTTCCACCCTTTTATGCCA

Secondary structure and sequence

TSD    TIR
5'



3'
    T                  AG  T      A      C           CA    A            A         A              A             CTCCCATCATTATAG        G         CAAAG            -    -T   -  ATA      CTCAACTAAAAAA    TAAACTTCGAAAAATCATAACTAATTTATTTTAAATCCTTTTTGAGTGAATAAAATTTTGTCAGAACCAGTGAAAAATTCTCTTTATATTAAAAATATTGTTGGAAAACTGCATGTTTCATGCT
GAGA AATCCCTTATATGTCACT  AA TTAACC GTTCCC TGTATGCCACT  AAAT GGCTTCTCCCTT TATGCCACT GTTCAAGTTTTTCC CCCTTTTATGCCA               TGTTAGTT ACTGTTAGT     GTTAGTTTCTTT TAAA  GAC CA   TGCCCT             TGTG                                                                                                                            
|||| ||||||||||||||||||  || |||||| |||||| |||||||||||  |||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||               |||||||| |||||||||     |||||||||||| ||||  ||| ||   ||||||             ||||                                                                                                                             
CTCT TTAGGGAATATACGGTGA  TT AATTGG CGAGGG ATATACGGTGA  TTTA CCGAAGAGGGAA ATATGGTGG CAAGTTCAAAGAGG GGGAAAATACGGT               GCAGTCAG TGGCAGTCA     TAATTGAAGAAA ATTT  CTG GT   ACGGGA             TAAT                                                                                                                            
    C                  GA  T      C      A           AG    A            A         C              A             -----------AACA        G         ACTGG            C    TT   C  -AA      --------AATCT    CATATGTTGGTTATTATCCATAAAATCATGATTATATCGATGACCTATGTTGTATATTTTTAACTAAAAAAAGACGTAGTGTACGTTAAAATCGGTAATGGTAGTGTTTATTTAAAAGTTACAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End