Plant MITE

SE2620300

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7268
Oryza sativa
SE2620300
Mutator
M64
Chr06:27963980-27964324
CACAAATTT
CACAAATTTTGACAATTTGACCCTTTGCAAAAACTATTTTTACAAATGAACCGCTGTCAAAACTTATTTCAAATCTGACCCTTTTGCTCAACGCCAAATCGTGTGGCGCTGAATTTAGACACCTTAGCGCCAAATAGCATGGCGTTGAATGTATGTTGGCACGCTGA

Secondary structure and sequence

TSD TIR

5'

3'

                                                                                                                                    -AA    A   C         A   T G    - T  CTTAGT
CACAAATTTTGACAATTTGACCCTTTGCAAAAACTATTTTTACAAATGAACCGCTGTCAAAACTTATTTCAAATCTGACCCTTTTGCTCAACGCCAAATCGTGTGGCGCTGAATTTAGACACCTTAGCGCCA   TAGC TGG GTTGAATGT TGT G CACG C GA      
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||| ||||||||| ||| | |||| | ||       
GTGTTTAAAACTGTTAAACTGGGAAATGTTTTTGATAAAAATGTTTATTTGGCGACGGTTTTGAATAAAGTTTAGACTGGGAAAACGAGTTGCGGTTTAGTACACCGCGACTTGAATCTGTGGAATCGCGGT   GTCG ACC CGATTTACG GCA C GTGC G CT      
                                                                                                                                    GTA    -   A         -   - G    T C  ACCCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620300

CACAAATTTTGACAATTTGACCCTTTGCAAAAACTATTTTTACAAATGAACCGCTGTCAAAACTTATTTCAAATCTGACCCTTTTGCTCAACGCCAAATCGTGTGGCGCTGAATTTAGACACCTTAGCGCCAAATAGCATGGCGTTGAATGTATGTTGGCACGCTGACTTAGTCTCCCATCCGTCGTGGCACGGCATTTAGCACCAGCTGATGTGGCGCTAAGGTGTCTAAGTTCAGCGCCACATGATTTGGCGTTGAGCAAAAGGGTCAGATTTGAAATAAGTTTTGGCAGCGGTTTATTTGTAAAAATAGTTTTTGTAAAGGGTCAAATTGTCAAAATTTGTG

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