SE2620301

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7269
  • Oryza sativa
  • SE2620301
  • Mutator
  • M65
  • Chr08:21113014-21113754
  • AGTAAAGTC
  • AGTAAAGTCCATCACCGGTCCCTAAACTTATACCGCTGTGTCATCCCAGTCCCTAAACTCGCAAATCGACCGTTCAGGTCCTCAAACTTGTTCGACTGTGTCATCCCGGTCCCTAAACTTGCAGATCACTCGTTTAGGTCCTCCAACTTGTTCAGTTGTGTCACCCCGGTCCCTAAGC

Secondary structure and sequence

TSD    TIR
5'



3'
        T                     A               C A    C             C                                                  C                     C                      A  C            ------------AT      CTAAAAACTTTATATCAAAAATAATTCATAACTTTTTCATGTGAACTCTAATGAAGACAAACTTTATATCAAAATTATAGCTCTCGACGTGACCTACAACTTTGTAGTTGATGAGTTTTTGAATTAAAACTGTTTAGGGTCCCAAAATATTGTTGCATGTTTATAGATTTTGAAATTT
 AGTAAAG CCATCACCGGTCCCTAAACTT TACCGCTGTGTCATC C GTCC TAAACTCGCAAAT GACCGTTCAGGTCCTCAAACTTGTTCGACTGTGTCATCCCGGTCCCTAAA TTGCAGATCACTCGTTTAGGT CTCCAACTTGTTCAGTTGTGTC CC CGGTCCCTAAGC              GACGGT                                                                                                                                                                                  
 ||||||| ||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||              ||||||                                                                                                                                                                                   
 TCATTTC GGTAGTGGCCAGGGATTTGAA ATGGCGACACAGTAG G CAGG ATTTGAGCGTTTA CTGGCAAGTCCAGGAGTTTGAACAAGTTGACACAGTAGGGCCAGGGATTT AACGTCTAGTGAGCAAATCTA GAGGTTGAACAAGTCAACACAG GG GCCAGGGATTTG              GTAGAC                                                                                                                                                                                  
C       T                     C               C C    T             A                                                  T                     A                      A  A            AATCTAAACTTATA      CCAGTTTATCCTGCTAGATTTCTGAAATATAAATTTTTATTAAGTATTGAAAAAGTATACTTGAGATTATTTCTGTTTTAAATATAGTTTGAACATCGGGAGCTGCGCTAGATGTTGAAATATCAACTAAAAAAAATAAAATTCAGTAAAAAACAGGGTTTTACATTAAAATTTTAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End