SE2620302

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7270
  • Oryza sativa
  • SE2620302
  • Mutator
  • M66
  • Chr09:6135767-6136455
  • GAGTAAATT
  • GAGTAAATTACGCTTATGGTACATGAACTTGTGTGGTAGGTGCAAATGGGTACAACAAGTTGCAAATTACTCATTTCAGTACAATAACTTACCTAGATTGTGCGAATT

Secondary structure and sequence

TSD    TIR
5'



3'
                              G      A    C               G   C     A T      A            AC    A     C     CA        ------   CCAAACAAGCAAAATTGTTCGAACTTAGCACGTACTGAGGTAGCAGTTTAATTTACACGCTAGATTATGTTTTGGAGATCTTATTTGCAATCGAAATAAAAAGAGAAATTAGTGATGCAAAAGTTTATTTCATTTCATTTCTCAGGAATTTTTGTTCTTTTATAACTCATGTTATGTTTATTTATATCTTTTGTGCCAAGACAATTTCTGGCATGCCATAG
GAGTAAATTACGCTTATGGTACATGAACTT TGTGGT GGTG AAATGGGTACAACAA TTG AAATT C CATTTC GTACAATAACTT  CTAG TTGTG GAATT  ACCATAAT      GAT                                                                                                                                                                                                                             
|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||| ||||| | |||||| ||||||||||||  |||| ||||| |||||  ||||||||      |||                                                                                                                                                                                                                              
CTCATTTAATGCGAGTGCCATGTACTTGAA ACACCA CCAC TTTATCCATGTTGTT AAC TTTAA G GTAAAG CATGTTATTGAA  GATC GGCAC CTTGG  TCCGTTTT      GTG                                                                                                                                                                                                                             
                              A      C    A               G   A     C T      C            CC    A     T     -A        TACTAT   TATTCATTTTAACTAGAGCGGACTGCGTATTACTATACATTAATAATAATGTGTTTTTAAATTTCAATGTTTTATACAACAATAATAGGTGCACTATAAAAATTCTAAATCTAACTATTTTTTTATTTTGTTAATTTGTACGGACCAGTGCTTTTATTTGAAAGTTATTTTACCTCGAAGACTTGTATCTTTAATTTTACTTAAAGGACCACAATGAACGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End