SE2620303

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7271
  • Oryza sativa
  • SE2620303
  • Mutator
  • M68
  • Chr03:7851787-7852011
  • AGGAATAAG
  • GGAATAAGTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
A            GATA     C          C  C     T                   C                  C --------ATAA    ----  CAAAACCGTGTGG
 GGAATAAGTTCA    TCATC CTCAACTTTA GT GAGTT GTATGACATCCCTAATCTT AATACCAGAAATCTTCAC C            ACTA    TA             
 ||||||||||||    ||||| |||||||||| || ||||| ||||||||||||||||||| |||||||||||||||||| |            ||||    ||             T
 CCTTATTCAAGT    AGTAG GAGTTGAAAT CG CTTAG CATACTGTAGGGATTAGGG TTATGGTCTTTAGAAGTG G            AGGG    GT             
C            GGAA     C          A  A     T                   A                  A AAGTTTAGAAGT    ATTA  ATGACGACACTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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