SE2620304

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7272
  • Oryza sativa
  • SE2620304
  • Mutator
  • M69
  • Chr08:7858355-7858832
  • GGGGAATTT
  • GGGGAATTTAACTATTTACCACTTTTAGGTTTGGCAATTATCCAAATACCCTTATTACGTTTGCTCTTTTTTTTTTGCCCCTCTTAGATGTGGCATCTTAACTATTTACCACTTTTGCCCACGTGGCATACCAACGTGGCAACCCAGGTGACAAAATGGTGTGGGACCCACTTGTCATTCTCTCCCCCCTTCACTCATTTCTCTCCCCCCCAGCTATTCAGGCGTCGGCGACGCC

Secondary structure and sequence

TSD    TIR
5'



3'
                 A                                   A            TTT  T            T         A            A                     AC                    C      G                           CCC             C  C   CC    A   --A         -GAC   GGCG
GGGGAATTTAACTATTT CCACTTTTAGGTTTGGCAATTATCCAAATACCCTT TTACGTTTGCTC   TT TTTTGCCCCTCT AGATGTGGC TCTTAACTATTT CCACTTTTGCCCACGTGGCAT  CAACGTGGCAACCCAGGTGA AAAATG TGTGGGACCCACTTGTCATTCTCTCCC   TTCACTCATTTCT TC CCC  AGCT TTC   GGCGTCGGC    GCC    
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||   || |||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||| |||||||||||||||||||||||||||   ||||||||||||| || |||  |||| |||   |||||||||    |||     
CCCCTTAAATTGATAAA GGTGAAAATCCAAACCGTTAATAGGTTTATGGGAA AATGCAAACGAG   AA AAAACGGGGAGA TCTACACCG AGAATTGATAAA GGTGAAAATGGGTGCACCGTA  GTTGCACCGTTGGGTCCACT TTTTGT GCACCCTGGGTGAACAGTAAGAGAGGG   AAGTGAGTAGAGA AG GGG  TTGA AGG   CTGCGGCCG    CGG    
                 C                                   G            TAT  C            T         A            C                     CA                    T      A                           ---             A  A   AC    G   AAG         GACC   AGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End