SE2620305

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7273
  • Oryza sativa
  • SE2620305
  • Mutator
  • M69
  • Chr11:2205042-2205773
  • GGGAATTTA
  • GGGAATTTAACTATTTGCCACTTTTAGGTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
                    C           CCAC                      C           A    A CA   --A                          CTG            C                                     -G            C            G   C   CCGC   T  C G   C   -C  TC    TC     ---   -  A   -GAT      CCCCGCAATGGGGGGAGCGGGACGAGCCGTTGTCGCCGCCGCCGCTCGCCCTCCACCCACTGCATCCGATCCCCGTCCTCGCGATGGGAGGATCAGGATGAGCCGTCGTCACCATC
GGGAATTTAACTATTTGCCA TTTTAGGTTTG    TTATCTAAATGCTCCTCTTAGG TTGCGCTTAAT ATTT C  CTG   AGAGATGATTTCTTAACTATTTGCCA   TTGCCTACGTGG GTGCCCGCGTGGAAAGTATCGTGGACCCCACTCGTCA  CCCTCCCCTATC TTCTTCTCCACC TCG TCG    TCG GG C CCG TGC  GC  GCCC  CACCC   GCC GC TCC    CCCCAT                                                                                                                    
|||||||||||||||||||| |||||||||||    |||||||||||||||||||||| ||||||||||| |||| |  |||   ||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||| ||| |||    ||| || | ||| |||  ||  ||||  |||||   ||| || |||    ||||||                                                                                                                     
CCCTTAAATTGATAAATGGT AAAATCCAAAC    AATAGGTTTACGGGGAGAATCC AACGCGAATTA TAAA G  GGC   TCTCTACTAAAGAATTGATAAACGGT   AACGGATGCACT TACGGGCGCACCTTTCGTAGCATCTGGGGTGGGCAGT  GGGAGGGGATAG AAGAAGAGGTGG GGC AGC    AGC CC G GGC ACG  CG  CGGG  GTGGG   CGG GG TGG    CGTGGG                                                                                                                    
                    A           AATA                      A           A    C AG   CTC                          AAA            A                                     AG            T            A   C   ----   T  A A   -   AC  CT    --     TAC   T  -   ACCT      CCTAACCCCTCCGCGTGATCCTCTCTGGCAGCTCCAGCTCCTTCTTCCTCTCCCGCGCCCCCAGCTACCATCAGCAGCCGTCCTAGTCTACGCCGCCTACCTCCCGCTCGCCACCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End