Plant MITE

SE2620306

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7274
Oryza sativa
SE2620306
Mutator
M70
Chr07:12901729-12902525
GAGAAATTG
GAGAAATTGGATATTGTGCCACTTCCAAAAGAGGGTTTCTCTGTAATGCCATTCCGCCGATTGGATTCGTTAAAATG

Secondary structure and sequence

TSD TIR

5'

3'

               G    A       A          TC            C   C         C         CCACC            CAA                                C                              C      -   CTTTGGGCTCCTTCTTCTAGCTCAACCCTTCTCTCTCCTTGGCCACTTGTTGAGCTGAGGAAGCGGCCATGAGAGGCGGATGCGACAGCGGAGCTCGATCCGGCGTCGGTGGTGCCGGCCACGGCCTCCGTCTCCGGGCTCTCGAAGAGGCGGCAAAGGCGGGCGAGAGGCAGCGGAGGTCGAAGCACCACCGGATGTGGCAGCAGCGGTGGCGGCGCTGGAGCTAGA
GAGAAATTGGATATT TGCC CTTCCAA AGAGGGTTTC  TGTAATGCCATT CGC GATTGGATT GTTAAAATG     TCTAAGCGATGC   GCATTTGTTTTGCCATATTCGCCATTTCGCTC ATTTTCATCAATTTTTGTACCCGGGCTGAC AAAATA CCC                                                                                                                                                                                                                                    
||||||||||||||| |||| ||||||| ||||||||||  |||||||||||| ||| ||||||||| |||||||||     ||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||                                                                                                                                                                                                                                    C
CTCTTTAACCTGTAA ACGG GAGGGTT TCTCCCAAAG  ATATTATGGTAA GTG TTAACCTAA CAATTTTAC     GGGTTTGCTACG   TGTAAACAAAATGGTATAAGCGGTAAAGTGAG TAAAAGTGGTTAAAAACGTGGGCCCGACTG TTTTAT GGG                                                                                                                                                                                                                                    
               G    A       C          CT            T   A         C         -AATA            ATA                                A                              A      A   AAGAAGATCGAGTCGAGAAGAGAAAAACCGGTGAGTAGCTCGACTCCTTTCCCCTCCGTCGCGCAGGATAGCAGCAGCGCCGCTCGAGGTCGGAGCCACCCCAATGGTGGAGGGGGAGGTGTCGACGTCGGCTCCCGCCGTTACAACGGAGCGTCGGCGACACGGGCGGAGTCGGGGCCGGGGTGTGGTGGGTGGGGGTTGATACCACAGGCAGCCAACCGGTACCCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620306

GAGAAATTGGATATTGTGCCACTTCCAAAAGAGGGTTTCTCTGTAATGCCATTCCGCCGATTGGATTCGTTAAAATGCCACCTCTAAGCGATGCCAAGCATTTGTTTTGCCATATTCGCCATTTCGCTCCATTTTCATCAATTTTTGTACCCGGGCTGACCAAAATACCCCTTTGGGCTCCTTCTTCTAGCTCAACCCTTCTCTCTCCTTGGCCACTTGTTGAGCTGAGGAAGCGGCCATGAGAGGCGGATGCGACAGCGGAGCTCGATCCGGCGTCGGTGGTGCCGGCCACGGCCTCCGTCTCCGGGCTCTCGAAGAGGCGGCAAAGGCGGGCGAGAGGCAGCGGAGGTCGAAGCACCACCGGATGTGGCAGCAGCGGTGGCGGCGCTGGAGCTAGACCCCCATGGCCAACCGACGGACACCATAGTTGGGGGTGGGTGGTGTGGGGCCGGGGCTGAGGCGGGCACAGCGGCTGCGAGGCAACATTGCCGCCCTCGGCTGCAGCTGTGGAGGGGGAGGTGGTAACCCCACCGAGGCTGGAGCTCGCCGCGACGACGATAGGACGCGCTGCCTCCCCTTTCCTCAGCTCGATGAGTGGCCAAAAAGAGAAGAGCTGAGCTAGAAGAAGGGATATTTTAGTCAGCCCGGGTGCAAAAATTGGTGAAAATAGAGTGAAATGGCGAATATGGTAAAACAAATGTATAGCATCGTTTGGGATAACATTTTAACCAATCCAATTAGTGTAATGGTATTATATCGAAACCCTCTCTTGGGAGAGGCAGAATGTCCAATTTCTC

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