SE2620307

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7275
  • Oryza sativa
  • SE2620307
  • Mutator
  • M71
  • Chr11:16593224-16593762
  • GAGTAAAAT
  • GAGTAAAATACATTGCCGGTCCTTAAAGTTGGAGCGAGGTGTCACTTAGATCCATGATCTAGGAAAATCGTCATTCGGGTCCGCGATCTTATTTAAGTGAATCATTTAGGTCCAAAGCGTCTCTGACCGGGTTGACTGGCTTACGTGGCCGTCCACGGTGGCAGCATATTTGCATTTTAGCCCCCCCACATCTTGGC

Secondary structure and sequence

TSD    TIR
5'



3'
       A     T                                   A                                        A                                    C                           C        C                       CA       ---------------------A  G  ------A - AA AATGGCGGCGACGGTTCTTGGTAAGGTGGTGCGAGCTGCTTGCCCGCCG
GAGTAAA TACAT GCCGGTCCTTAAAGTTGGAGCGAGGTGTCACTTAG TCCATGATCTAGGAAAATCGTCATTCGGGTCCGCGATCTT TTTAAGTGAATCATTTAGGTCCAAAGCGTCTCTGAC GGGTTGACTGGCTTACGTGGCCGTCCA GGTGGCAG ATATTTGCATTTTAGCCCCCCCA  TCTTGGC                      AC GT       G C  C                                                 
||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  |||||||                      || ||       | |  |                                                  
CTCATTT ATGTG CGGCCAGGAATTTCAACCTCGCTCCACAGTGAATC AGGTACTAGATCCTTTTAGCAGTAAGCCCAGGCGCTAGAA AAATTCACTTAGTAAATCCAGGTTTCGCGGAGACTG CCCAACTGACCGAATGCACCGGCAGGT CCACCGTC TATAAACGTAAAATCGGGGGGGT  AGAACCG                      AG AG       T T  A                                                 
       C     C                                   C                                        C                                    A                           A        A                       --       AAGGGGAACAGAGATAGAGTAA  -  ATAGAGG G -- CGACGATCGATGACTGGTAGTGGGCACGTACGTACTCGGTACGTACCCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End