SE2620309

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7277
  • Oryza sativa
  • SE2620309
  • Mutator
  • M73
  • Chr05:26332295-26332686
  • ATAAATTAA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAATTAA  -  TAAT -          ------   TCGAAATGTGGCAAATCAAAAAAATACCACACATATTCGCGATATCGGTTAGATACCACTGAAATTTTGGAAAATTGGATCCATGCCACTCCGTCACATTTTCCATCATATTCTCTCACGCCGTCTCCGTTCCCCTTCCTTCCCCCACGTCGGCAGGCTACGGGGTG
         GG GT    T GGATCCATGC      CAC                                                                                                                                                                       
         || ||    | ||||||||||      |||                                                                                                                                                                        
         AG TG    C GCACGCCGCT      CCT                                                                                                                                                                       
        C  C  ---- C          CTTTCA   CCCGCAGCCGACGCACCACCGCACAGGAACCACCGGCGGCGTAGGAGCCTCCCCGCTGCTCAGGGGCCGCTGCCGCAGGAACCTCGCCCTCTCCAGCCGCTCGCCACGGGCCTACAGCTGGTACCGCTACCGCTGTCACCACCGGCGGAGCAGTACGTGGCGCCGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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