SE2620310

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7278
  • Oryza sativa
  • SE2620310
  • Mutator
  • M73
  • Chr08:24814898-24815658
  • GGGTTAATT
  • GGGTTAATTTGATCCATGCCACTCTAAATATGGCAAATAAAAAAATACCACTACTATTCGCGTTATTGGCTAAGTGCCACTGAAAATTTTTAAAATTGGATCCATGCCACTCCCGCCACTTTTACCATCCTCCTTCCTCACGTCAGCATCCTCACC

Secondary structure and sequence

TSD    TIR
5'



3'
                       C     A   C            A             C          AA                           TC             C  CTT  A  A        C        AG  T           -  A  A  AG A  GGAA  AGCAGCGGGAGCGGGAGTAGCGGTGGCGGTGGCATGGTGCACGCGAGGCGCGGGAGGAGAAGTAGCGGCGGCCCTCGCCGACCGGAGCTGGAGGAGGAGACAGGGATCGGGAGGAGCGGCGGCGGCGCTTGAGCTAAAGGAGGAGATGGGGATCGAGGGGAGCAGTAGCGGCGACAGCCCTCGTCGGTGGGGTTGGCGGCGAC
GGGTTAATTTGATCCATGCCACT TAAAT TGG AAATAAAAAAAT CCACTACTATTCG GTTATTGGCT  GTGCCACTGAAAATTTTTAAAATTGGA  CATGCCACTCCCG CA   TT CC TCCTCCTT CTCACGTC  CA CCTCACCGTCA CC GC GC  C GT    GT                                                                                                                                                                                                           
||||||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||  ||||||||||||| ||   || || |||||||| ||||||||  || ||||||||||| || || ||  | ||    ||                                                                                                                                                                                                           G
CCCAATTAAATTAGGTACGGTGA GTTTA ACC TTTATTTTTTTA GGTGATGATAAGC CAATAGCTGA  CACGGTGACTTTTAAAAATTTTAATTT  GTACGGTGAGGGC GT   AA GG AGGAGGAG GAGTGCGG  GT GGAGTGGCACC AC GC GG  C GC    TC                                                                                                                                                                                                           
                       T     C   A            C             A          CC                           TA             A  AAT  A  C        A        CG  T           A  G  -  -- T  ----  CAGCGCGCGGCTTGCGGGTACCCTGCTCCCCCGAGGCACATCCTGCAACGGGGCTGGAGCGTCGGGAAACGTGGTGGAAGGTGTGGGGTGTTGGCGTCGCTCCTCCTACCCGAAGGCCGCTCGTGATCCAAGGTGTGGCTGCCGTGGCGCCTACTACCCGAAGGCGGCGACGAGGAGGGTTAGGGGCAGAGGAGGAGGTCGAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End