SE2620311

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7279
  • Oryza sativa
  • SE2620311
  • Mutator
  • M73
  • Chr01:25860304-25860650
  • GGGTTAATT
  • GGGTTAATTGTATCCATGCCACTACAAATATGCCATTTTAGATAAATACCACTACTATTCATGATATCGGCTACGTGCCACTGGAATTTGGGGAAATTGGAACCGTGCCACTCTGTCGCGTTTTCCGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
          TA                    C              AC     C                  C         G               GA C    C          C          AAAAAT  -     A  CTCAACCGGACGTGCGGAAAAAAGAAGAGGC
GGGTTAATTG  TCCATGCCACTACAAATATG CATTTTAGATAAAT  CACTA TATTCATGATATCGGCTA GTGCCACTG AATTTGGGGAAATTG  A CGTG CACTCTGTCG GTTTTCCGTC      CT TCGTT GC                               
||||||||||  |||||||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||| ||||||||| |||||||||||||||  | |||| |||||||||| ||||||||||      || ||||| ||                               G
CCCAATTAAC  GGGTATGGTGATGTTTATAC GTGAAATCTATTTA  GTGAT ATAAGTGCTATAGCCGAT CACGGTGAC TTAAACCCCTTTAAC  T GCAC GTGAGGCAGT CAAAAGGCAG      GA TTACA CC                               
          CC                    T              CA     A                  A         G               AT T    C          A          ------  G     -  CTAGGTGTATAGTCAAGGTACAAGGAGGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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