SE2620312

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7280
  • Oryza sativa
  • SE2620312
  • Mutator
  • M76
  • Chr09:6989323-6989781
  • GGAATAAGT
  • GGAATAAGTCTATTTTACCTCCCCCAACTCTTGCTGCTAATTGAATCACATCCCTCAACCGCGAAACCGGGTATAAAGACTCCCCCATCTGTAAAAACC

Secondary structure and sequence

TSD    TIR
5'



3'
               TA      C  A       T   -A       C            CGC     C        AGA        T  G        GATG   ATC T    TTCG  -     -     A      CAT           ATT     CTC   ----------    AA  GAATGAAAAGGGGGCTGACAGGTGGACCCCACCATTTTTTATTTTTATCATTT
GGAATAAGTCTATTT  CCTCCC CA CTCTTGC GCT  ATTGAAT ACATCCCTCAAC   GAAAC GGGTATAA   CTCCCCCA CT TAAAAACC    CAA   G CTCC    AC GGTTT GGGAG TGGTTT   CTGATGTGGCA   TTGAC   GGT          GGAG  GA                                                     
|||||||||||||||  |||||| || ||||||| |||  ||||||| ||||||||||||   ||||| ||||||||   |||||||| || ||||||||    |||   | ||||    || ||||| ||||| ||||||   |||||||||||   |||||   |||          ||||  ||                                                      
CCTTATTCAGATAAA  GGAGGG GT GAGAACG CGA  TAACTTA TGTAGGGAGTTG   TTTTG CTCATATT   GAGGGGGT GA GTTTTTGG    GTT   C GAGG    TG CCAAA TCTTC GCCAAA   GACTGTACCGT   AACTG   CCA          ACTG  CC                                                     
               TA      A  A       -   AC       A            ATA     A        GTA        T  A        ACAA   GAA T    ----  A     A     -      AAT           -CC     -AA   GATTTACACA    CA  ATCGGATCAGTAACTTCCTCAATTTTTATTTTCACCCAGGGTGTACATTCACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End