SE2620313

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7281
  • Oryza sativa
  • SE2620313
  • Mutator
  • M79
  • Chr06:19917620-19918269
  • GGAATAAGT
  • GGAATAAGTTCACCTTAGGTCCCTCTATTTGTCGCGCAGATCGATTTTCGTCCCTTCATTGCAAAACCAGGTACAAATGGGTCCCCCAACTTACAAAACCGTTTAAATAAGATCCATCGGCAGTATTGTGTCTGGTTTTGGCTGAGGTGACCCTTGCGTAGCACAATTTGACTAATCTTTGCCCAATGTGTCAATGACGTGGCGCTTATGTGGCAATTAGATCTGGAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
             C  A   CC             G   A    T   C            C      A       A   G                A         T       A                                   C       A  A AA  T     -A        C         A         G                     G      CTAAAAAAA     G  G  GGGTCTGGAGGACTTCGAGCAACGGGAGTCGTCGTCGCCCATTTTTTATTATTTGTGTGGGGATAGAGAGAAGAG
GGAATAAGTTCAC TT GGT  CTCTATTTGTCGC CAG TCGA TTT GTCCCTTCATTG AAAACC GGTACAA TGG TCCCCCAACTTACAAA CCGTTTAAA AAGATCC TCGGCAGTATTGTGTCTGGTTTTGGCTGAGGTGAC CTTGCGT GC C  TT GACTA  TCTTTGCC AATGTGTCA TGACGTGGC CTTATGTGGCAATTAGATCTG AAAAAA         CCCGT GC CG                                                                           
||||||||||||| || |||  ||||||||||||| ||| |||| ||| |||||||||||| |||||| ||||||| ||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |  || |||||  |||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||         ||||| || ||                                                                           A
CCTTATTCAAGTG AA CTA  GAGATAAACAGCG GTC GGCT AAA TAGGGAAGTAGC TTTTGG CCGTGTT GCC AGGGGGTTGAATGTTT GGCAAATTT TTTTAGG AGCCGTCATAACACAGGCCAAAACTGACTCCACTG GGATGCA TG G  AA CTGAT  AGAAACGG TTACACAGT ACTGCACCG GAATGCACCGTTAATCTAGGC TTTTTT         TTGTG CA CC                                                                           
             A  C   TA             A   A    T   A            A      A       -   G                A         -       G                                   C       C  A GA  C     CC        A         A         G                     G      --ATTCTTT     -  -  CTGGGTGTACAGTCGACGCGTGTGTTTATTATTTTTTACCACCCGGGTACACCTGGGTGTGCAGTAGGAGTGATG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End