Plant MITE

SE2620314

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7282
Oryza sativa
SE2620314
Mutator
M81
Chr01:13046615-13046845
AGGGTTGCT
AGGGTTGCTACAAAACAGGATCCCGTTGCAACGGGATAGAC

Secondary structure and sequence

TSD TIR

5'

3'

    TTG   CAA   A  -         C         GA ATATTAACTATT   -   C  GA  ATCACAGGTATAAGGTCCTAAATATCATAGGTACCGGATAACAGACATCA
AGGG   CTA   AAC GG ATCCCGTTG AACGGGATA  C            ATC TTG AC  GT                                                  
||||   |||   ||| || ||||||||| |||||||||  |            ||| ||| ||  ||                                                  C
TCTT   GAT   TTG CC TAGGGCAAC TTGCCCTAT  G            CAT GAC TA  TG                                                  
    TTG   CTG   -  A         A         GG AAGATACACTGT   G   -  --  GACTATGCCACTATGGATAACACCATGGTCGATGTACCATGGGCTATAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620314

AGGGTTGCTACAAAACAGGATCCCGTTGCAACGGGATAGACATATTAACTATTATCTTGCACGAGTATCACAGGTATAAGGTCCTAAATATCATAGGTACCGGATAACAGACATCACAGATATCGGGTACCATGTAGCTGGTACCACAATAGGTATCACCGTATCAGGTATCAGGTACTGTCACATAGAAGGGTATCCCGTTACAACGGGATACCGTTGTCTAGGTTTTCT

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