Plant MITE

SE2620315

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7283
Oryza sativa
SE2620315
Mutator
M81
Chr12:5537636-5537859
CAGAAAACC
CTAGACAACGGTATCTCGTTGGAATGGGATATCCTTCTATGAG

Secondary structure and sequence

TSD TIR

5'

3'

CAGAAAAC   G C     T    C    G         --------------  -   C      A   TACTGATATCTGATACCTGTTGTGGTACCAGCTGCATGGTACTCGATACA
        CTA A AACGG ATCT GTTG AATGGGATA              TC CTT TATGAG CAG                                                  
        ||| | ||||| |||| |||| |||||||||              || ||| |||||| |||                                                   
        GAT T TTGCC TAGG CAAC TTGCCCTAT              AG GAG GTACTC ATA                                                  
CTCCCGAC   G T     C    A    G         CTGTATAATTGATA  A   C      -   GTGTCCATAATCCAGGATCCATAGCGTCCATGGCCCATTGTCCATATTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620315

CAGAAAACCTAGACAACGGTATCTCGTTGGAATGGGATATCCTTCTATGAGACAGTACTGATATCTGATACCTGTTGTGGTACCAGCTGCATGGTACTCGATACATGTTATACCTGTTACCCGGTACCTGCGATACCTAGGACCTAATACCTGTGATACTCATGCGAGAGAATAGTTAATATGTCTATCCCGTTGCAACAGGATCCCGTTTTGTAGCAGCCCTC

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