SE2620316

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7284
  • Oryza sativa
  • SE2620316
  • Mutator
  • M12
  • Chr03:26944422-26944788
  • GAGTAAATT
  • AATTGCAATTTGGACCACCTTTTATTACCCAAGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
GAGTA      AA     A   CC          C      CAAGTTTCAA                             A                  ATC   A   C      A            -AAC     TCGTCACGTCTAACTTCTCTTTTG       T    A  A  --    GAAGAGT      G  T
     AATTGC  TTTGG CCA  TTTTATTACC AAGTTT          TTTGGATCACCCTTAAACATATCTTTTCA TTTGGACCGGGTAAATTT   ATT TTA GGTTTG ACTATCATGAAC    TTTTC                        GCAAACA ATGA CC TA  CATA       TCGGCT TA 
     ||||||  ||||| |||  |||||||||| ||||||          ||||||||||||||||||||||||||||| ||||||||||||||||||   ||| ||| |||||| ||||||||||||    |||||                        ||||||| |||| || ||  ||||       |||||| || A
     TTAATG  AAACC GGT  AAAATAATGG TTCAAA          AAACCTGGTGGGAATTTGTATAGAAAAGT AAACTTGGCCTATTTAAA   TAA AAT TTAAAC TGGTGGTGCTTG    AAAAG                        TGTTTGT TGCT GG AT  GTGT       AGTCGA AT 
CTAAC      CA     C   CT          A      -------ATA                             G                  CGA   C   A      C            CTAA     ---------------------TCA       -    -  A  TC    -------      G  C

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End