SE2620317

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7285
  • Oryza sativa
  • SE2620317
  • Mutator
  • M83
  • Chr01:4457156-4457919
  • GAGTAAATT
  • GAGTAAATTCCCTGTGTATCCCTGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
   T       C               ACTCA  A         C        AA     AC CG  -C    C                CAA           C         A      CATTTT  -ATC     A    -------T  -     GTTGCAAATGTCTTTTTTGCCCTTGATGCTTTAGGTTTAAATATAAGCTTCAAAAATAATTGAAAATTTTGTTTGAGTGCACATCGTGTGCATTTTATAAAACTAATGAGACTAAATAATTAGTGCAGAAAATTTTGACATAAATTTTGAAAATAAAATAAATGTAAAAAATTAAAATTTTTATTTGAAATTTTAATAGGACAATGGATTTTTTTATCAGGAGCATTCA
GAG AAATTCC TGTGTATCCCTGAAA     CT AATCCCTTT ATACCCCT  AATTT  C  AC  CCTT TATACCCCTGAAATTT   TTTGATCCCTT CATGCCCCT CCGTTA      CC    ATTTT CTGT        AC GTTTG                                                                                                                                                                                                                                     
||| ||||||| |||||||||||||||     || ||||||||| ||||||||  |||||  |  ||  |||| ||||||||||||||||   ||||||||||| ||||||||| ||||||      ||    ||||| ||||        || |||||                                                                                                                                                                                                                                     T
CTC TTTAGGG ATATATGGGGACTTT     GG TTAGGGAAG TATGGGGA  TTAAA  G  TG  GGAA ATATGGGGGTTTTAAA   AAACTAGGGAA GTATGGGGA GGCAAT      GG    TAAAA GATA        GG AAAAT                                                                                                                                                                                                                                     
   T       A               AAAAA  A         A        -C     AC AA  AA    T                CTA           C         G      -CAACT  CACA     -    TTTTTACT  T     GGGAACCTACTTGTTTCTTTAAGTATTTAATGTAATAATTTTTATATTTTCGAAGAGCGTACTCTGATAATATCAATACTCAAACAACACGCTACGTAATAAATAGGGTTTTTTTATAAAAATCTATTACTTTATTTTTTTTATGCATAAATAAAAAAATTTTTTTCTAGTATTTTTACTCCTCGTAAGTATATTTCTATCCATATGGTTACAAGTGTTGTAAAAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End