SE2620318

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7286
  • Oryza sativa
  • SE2620318
  • Mutator
  • M83
  • Chr02:8776491-8777234
  • GAGAAAATC
  • GAGAAAATCCCCTGTGTATCCCTGAAAGTTCACCTAATCCCTTCTGTACCTTTGAATTTTGCTCAATCCCTTAAATATCCCTGAATTTTAGTTTGGATCCTTTCCATGCCCTTTCCGCTAGTTGACTGTTAAATTCTTATGAAAAAGTCCATTTTACCCTTTGGTATAAAGAAGCATATAAATTAATAGAGTATATTGTTGAAGCATAGAAATTTGTTATATGAGACTATTATGTTTATGAGATAGTTATGCACCATATTATTTGCGATAAATATACTTTTAGATGTGATATAAAAAATTAATACTTATTTATTAGTTATTAATAGATTTTTTTAGCATATGTGTTCTGATAGTAATAAATA

Secondary structure and sequence

TSD    TIR
5'



3'
                     C                          C                   C    A      C                                                  -----------       A                A       G   A          -         A            -   GCA            AT                      -  A  T                 C       A        G              A                         T  A      ---             C G         -    AA
GAGAAAATCCCCTGTGTATCC TGAAAGTTCACCTAATCCCTTCTGTA CTTTGAATTTTGCTCAATC CTTA ATATCC TGAATTTTAGTTTGGATCCTTTCCATGCCCTTTCCGCTAGTTGACTGTTA           AATTCTT TGAAAAAGTCCATTTT CCCTTTG TAT AAGAAGCATA TAAATTAAT GAGTATATTGTT GAA   TAGAAATTTGTT  ATGAGACTATTATGTTTATGAG AT GT ATGCACCATATTATTTG GATAAAT TACTTTTA ATGTGATATAAAAA TTAATACTTATTTATTAGTTATTAA AG TTTTTT   TAGCATATGTGTT T ATAGTAATA AATA  
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||| |||||||||||||||| ||||||| ||| |||||||||| ||||||||| |||||||||||| |||   ||||||||||||  |||||||||||||||||||||| || || ||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||   ||||||||||||| | ||||||||| ||||   
CTCTTTTAGGGGATACATGGG ACTTTCAAGTGGATTAGGGAAGATAT GGGACTTAAAACGAGTTAG GAAT TATGGG ACTTAAAATCAAACCTAGGGAAGGTACGGGAAAGGCGATCAACTGACAAT           TTAAGAA ACTTTTTCAGGTAAAA GGGAAAC ATA TTCTTTGTAT ATTTAATTA TTCATATAACAA CTT   ATTTTTAAATAA  TACTCTGATAATATAAATACTC TA CA TACGTGGTATAATAAAC CTGTTTA ATGAAAAT TATACTATATTTTT AATTATGAATAAATAATCAATAATT TC AGAAAA   ATCGTATACACAA A TATCATTAT TTGT  
                     T                          A                   A    G      A                                                  CAACTGGCAAT       A                C       G   C          T         C            T   -AC            CC                      A  -  C                 A       A        G              C                         T  A      TAC             A G         G    CT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End