SE2620319

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7287
  • Oryza sativa
  • SE2620319
  • Mutator
  • M84
  • Chr05:22980867-22981314
  • AGAATCCCC
  • C

Secondary structure and sequence

TSD    TIR
5'



3' 
AGAATCCCCCCATCCATACGCATGAATACCGAAGCAAAA       CTCAAAAC -  ATGAAAAGTGTCATCCCTCTTATTAGATGGGAATATATCCTATGCGCACAAGCTCTCGTGCACACCAATTAGCAAATATCACAGAAAATTCTAGAGAAAATTGGACACATACTTCCAATAGTATTACACCTACGTGTGAGATCTTACATTCAAATGTATTATATTTAGCCGTAACAAAAAAGAAAAA
                                       CTAAAGA        C AC                                                                                                                                                                                           
                                       |||||||        | ||                                                                                                                                                                                            
                                       CCCTTAT        A AG                                                                                                                                                                                           
                                              -------- C  GATATATGTGTTCGAAGGGCACGGGTAATTGATCGTTTACAGTACTTTTTTTGATGTTTTTTTATCTGTAAATGAGTATTATCATAATGTGTATATATGTTTCAGAGTATAAGTTTAAGTTATATAAAATAGACATTGTTTTTTTTCAATTTTTAGACTGTAAAATTTCCATTTTGAGACAGTCTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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