SE2620320

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7288
  • Oryza sativa
  • SE2620320
  • Mutator
  • M84
  • Chr01:21172279-21172654
  • GGGAGCGTA
  • GGGAGCGTATCCTATGCACACAGGCCCTCGCGTGTACACACTGTGTACACCAACTAAAAATTATCACAAAAAATTCTAGGAAAATTCATACATGTACTTTTAATAGTATTACATCTACGTGCAAAGTC

Secondary structure and sequence

TSD    TIR
5'



3'
  G                                      T   T              TTA    A     T          T                   A            -C  GC      GCAT T           C  -CA   AGAA            TAAAAT       AAATTGCAA
GG AGCGTATCCTATGCACACAGGCCCTCGCGTGTACACAC GTG ACACCAACTAAAAA   TCAC AAAAA TCTAGGAAAA TCATACATGTACTTTTAAT GTATTACATCTA  GT  AAAGTC    C TCAAATTCATT TA   TAG    TAACAAAAAAGA      TCTGACA         
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||   |||| ||||| |||||||||| ||||||||||||||||||| ||||||||||||  ||  ||||||    | ||||||||||| ||   |||    ||||||||||||      |||||||          
CC TTGTATAGGATACGTGTGTCCGGGAGTGCACATGTGTG CAC TGTGGTTGATTTTT   AGTG TTTTT AGATCTTTTT AGTATGTGTATGAAAGTTA CATAATGTGGAT  CA  TTTTAG    G AGTTTAAGTAA AT   ATC    ATTGTTTTTTTT      AGACTGT         
  G                                      -   T              TAC    G     T          T                   A            CC  -A      AATT C           T  AAA   -GGC            -----T       CAAAATTCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End