SE2620321

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7289
  • Oryza sativa
  • SE2620321
  • Mutator
  • M84
  • Chr03:14099895-14100280
  • GGGAACATA
  • GGGAACATATCGTACACAAGCTTCTCGTGCACACTCCG

Secondary structure and sequence

TSD    TIR
5'



3'
          ----C                  C        ATCCATA            C    A     G          A     --GTT   CA          ----A         C  C       --   T   CT              A           CT       ---    T     C  A    TAC
GGGAACATAT     GTACACAAGCTTCTCGTG ACACTCCG       CACACCAACTAG AAAT TCACA AAAATTCTAT AAAAA     ACA  TACTTTTAAT     GTATTACAT TA GTGTGAA  ATC TAT  TCAAATTCATTATA TTTAGCCGTAA  AGAAGAA   AAAA TCTGA AG TTTT   
||||||||||     |||||||||||||||||| ||||||||       |||||||||||| |||| ||||| |||||||||| |||||     |||  ||||||||||     ||||||||| || |||||||  ||| |||  |||||||||||||| |||||||||||  |||||||   |||| ||||| || ||||   A
CCCTTGTATA     CGTGTGTTCGAAGGGCAC TGTGAGGC       GTGTGGTTGATT TTTA AGTGT TTTTAAGATG TTTTT     TGT  ATGAGGATTA     CATAATGTG AT TACGTTT  TAG ATA  AGTTTAAGTAATAT AAATCGGCATT  TTTTCTT   TTTT AGGCT TC AAAA   
          AAATA                  A        -----AC            T    C     A          C     AAACT   AA          ATCAC         T  A       CA   C   --              A           AT       CAC    T     A  -    TTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End