SE2620322

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7290
  • Oryza sativa
  • SE2620322
  • Mutator
  • M85
  • Chr11:26305758-26305941
  • GAGATTTTT
  • GAGATTTTTTCTGGTTCAACAAAAAGTATCTCGAGGTACAGCTACCGTACAGTACTAAATCCTTTGCAATCATTAGATCTAGCTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
       T  C    T   --C           C       A C    G   A          C   G A   A  A        -TA   AGG
GAGATTT TT TGGT CAA   AAAAAGTATCT GAGGTAC G TACC TAC GTACTAAATC TTT C ATC TT GATCTAGC   GAT   
||||||| || |||| |||   ||||||||||| ||||||| | |||| ||| |||||||||| ||| | ||| || ||||||||   |||    
CTCTAAA GA ACTA GTT   TTTTTCATGGA CTCTATG C ATGG GTG CATGGTTTAG AAA G TAG AA CTAGATTG   CTG   
       T  A    -   TTT           A       G T    A   C          C   G C   C  C        TAA   ATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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