Plant MITE

SE2620324

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7292
Oryza sativa
SE2620324
Mutator
M85
Chr07:13258354-13258536
GAGATTTGC
GAGATTTGCTCCGGTCCAATAAAAAGTAGCTCGAGGTACCGGTAGCTCACGGTACCAAATCGTTTTCGATCGTTGGATCTAACAATGC

Secondary structure and sequence

TSD TIR

5'

3'

           C                                G                                    A AAT  TCA
GAGATTTGCTC GGTCCAATAAAAAGTAGCTCGAGGTACCGGTA CTCACGGTACCAAATCGTTTTCGATCGTTGGATCTA C   GC   
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |   ||   T
CTCTAAACGAG CCAGGTTGTTTTTCATTGAGCTCCATGGCCAT GAGTGCCATGGTTTAGTAAAAGCTAGCAACCTAGAT G   CG   
           A                                G                                    C ACC  TCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620324

GAGATTTGCTCCGGTCCAATAAAAAGTAGCTCGAGGTACCGGTAGCTCACGGTACCAAATCGTTTTCGATCGTTGGATCTAACAATGCTCATCCTGCCCAGCTAGATCCAACGATCGAAAATGATTTGGTACCGTGAGGTACCGGTACCTCGAGTTACTTTTTGTTGGACCAGAGCAAATCTC

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