SE2620325

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7293
  • Oryza sativa
  • SE2620325
  • Mutator
  • M85
  • Chr07:25212075-25212683
  • GAGGATTTT
  • GAGGATTTTTACAGTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
       T    A     -----AC     CTTGCGGTACCGATTATTGACCGTTGGATCGAGGCAGATCGAACGGCTGGCGTAGATCGGTACCGCGGGGTACCAGTTTTGTCCCCGAAGCGGTACCGAGTGATGATAATCGGTGGAAGGGCAGTATTGTAATTTCGCGTGCAATAGATGGGTCTGGATCGAGATCGAGCGGCTTGAACCCTAGCGAAGCTGGATGATTTTCGCCGCTGCCGCCGTGTTCCTCTTCCTCGCCACCACCGCCGTGTTCCTCTTCCGCCGCCGGACTTGTTCCTCTTCC
GAGGATT TTAC GTCCA       GGTAC                                                                                                                                                                                                                                                                                     
||||||| |||| |||||       |||||                                                                                                                                                                                                                                                                                      
CTCCTAA GATG CAGGT       CATGG                                                                                                                                                                                                                                                                                     
       C    G     CGTCCAA     CCCGCCATGACCATGGCGCGCCATGGTTCTGTGTAGATTGGCAACTTAGGCCCTACCCATCCTAGCCCTCTCTTTTCTACTCGTTCCCACCTACTCCCTCATGGACAAAGCTCAGCAGCAAGGGCCGCCGCCGCCGCAGGTTCAGTAACAGTAAGGGCCGCCGCCGCGTCTCGTTGTTCCCTTGCGACCGTCGCGCCCTCTCCTATTTCAGACCGCCGCCGCGCTCTCTCTTTTTTCCCTTGCCGCCGCCGCGCCCTCTCCTTTGTTCAGGCCGCCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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