SE2620326

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7294
  • Oryza sativa
  • SE2620326
  • Mutator
  • M86
  • Chr04:18744610-18745072
  • GGCAAATTT
  • GGCAAATTTTGCTATATGACAGTTAAATTTTATGTAATTTGCTGGTGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                     G         A            G    CATCATAA                                A             A            A   C       AA  G        TAA      A     A      G     AAATTT      CTGAGACTAGAACAAAGATGAAATATAATGTATGCTAGTGATGTACTTGGGGAG
GGCAAATTTTGCTATATGACA TTAAATTTT TGTAATTTGCTG TGGA        AAATGTGTTATGGCTGAAAGACATTCTAAAAA TTGGTAATTTGCT GAGGACACTTTC GCT AATTGGA  GA AAATTCTT   AAAGAC AGAAT CCCCTA GGTCA      TTTTAG                                                      
||||||||||||||||||||| ||||||||| |||||||||||| ||||        |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||||  || ||||||||   |||||| ||||| |||||| |||||      ||||||                                                       
CCGTTTAAAATGATATACTGT AGTTTAAAA ACATTAAACGAC ATCT        TTTACATAATACCGACTTTCTGTGAGATTTTT GACCGTTAAACGA CTCCTGTGAAAG CGA TTAACCT  CT TTTAAGAA   TTTCTG TCTTA GGGGAT CTGGT      GTACGA                                                      
                     G         C            G    -TTAACAA                                C             C            C   C       AA  A        TTC      C     C      A     ------      AATTTATACTACAATCTCATTTTTAAATCTATAATAGTTTAGATTTAAACGGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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