SE2620327

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7295
  • Oryza sativa
  • SE2620327
  • Mutator
  • M86
  • Chr07:5870390-5870848
  • AAATTTTGC
  • AAATTTTGCTACGGGACACTCAAAAATTGTGTAATTTACTGGTAGACATTGTAAAAACGTGTCATGGCTGAAAGACACTCTAAAAAACTGATAATTTGCTGGAGGACACTTTTGGCTCAATTGGAGGGA

Secondary structure and sequence

TSD    TIR
5'



3'
                    C   AA           A        C    T                         CTC          A            G  C          C       GG  ATTT     CAA      A      -        G   AAA   TTTGGGCTGAGACTGGAGCGAAGGTGAAATATAATGTATGCTAGTGATATACTTGGGGA
AAATTTTGCTACGGGACACT AAA  TTGTGTAATTT CTGGTAGA ATTG AAAAACGTGTCATGGCTGAAAGACA   TAAAAAACTG TAATTTGCTGGA GA ACTTTTGGCT AATTGGA  GA    TTTTT   AAAGAC AGAATG CCCCTAGT TCA   GCC                                                           
|||||||||||||||||||| |||  ||||||||||| |||||||| |||| |||||||||||||||||||||||||   |||||||||| |||||||||||| || |||||||||| |||||||  ||    |||||   |||||| |||||| |||||||| |||   |||                                                            
TTTAAAACGATGTCTTGTGG TTT  AACACATTAAA GACTATCT TAGC TTTTTGTATAGTGCCGACTTTCTGT   ATTTTTTGAC ATTAAACGATCT CT TGAAAGCCGA TTAACCT  CT    AAGAA   TTTCTG TCTTAC GGGATTGT GGT   GTA                                                           
                    A   AA           C        A    T                         ATA          C            A  A          A       AA  ATTT     TTA      C      A        -   ---   CGAAGTTTGTACTACAATCTCATTTTAAAATCTTTCATACGTTGAGATTTAAACGGTAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End