SE2620328

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7296
  • Oryza sativa
  • SE2620328
  • Mutator
  • M86
  • Chr09:11438581-11439046
  • GGCAAAATT
  • GGCAAAATTTGCTACAG

Secondary structure and sequence

TSD    TIR
5'



3'
       A          AACAC     T   T                   TCATAAAA      CA   -     A             A          A  A                C              A     C     -        T             AAA     TGAG       TGG  -  ACG  GGAATATAATATATGCTAATGATGTACTTAGGGTTAT
 GGCAAA TTTGCTACAG     TCGAA TTT TGTAATTTGCTGGTAGGCA        ATGTGT  CGG TGAAA GACACTCTAAAAA TTGGTAATTT CT GAGGATACTTTTGGCT AATTGGAGAGAGAA TTCTT AAGAA GACAAGAA GCTCCTAGGGTCA   GCTTT    CTAAGAT   AG CG   AT                                     
 |||||| ||||||||||     ||||| ||| |||||||||||||||||||        ||||||  ||| ||||| ||||||||||||| |||||||||| || |||||||||||||||| |||||||||||||| ||||| ||||| |||||||| |||||||||||||   |||||    |||||||   || ||   ||                                     G
 CCGTTT AAACGATGTC     GGTTT AAA ACGTTAAACGATTATCTGT        TGTACA  GTT ACTTT CTGTGAGATTTTT GATCATTAAA GA CTCCTGTGAAAGTCGA TTAACCTTTCTCTT AAGAA TTCTT CTGTTCTT CGGGGATTCTGGT   CGAAG    TTAGTAC   TG AA   TC                                     
T      A          CTATA     T   C                   TGCTTTCG      AC   G     -             -          C  C                A              A     -     G        C             GCA     ----       ---  C  ---  TCATTTTTTTTGTCTTTAATACGTTGAGATTTAAACG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End