SE2620329

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7297
  • Oryza sativa
  • SE2620329
  • Mutator
  • M87
  • Chr12:18310765-18311271
  • GAGTGAAGT
  • GAGTGAAGTACATGGGCGGTCCCGAAACTTGTGCCAGTGTGTCATCTAGGTCCCCGAACTCCTAAAATGCATTTTTAGGTCCCTGAACTTGTCATGTGTGTCATATAGGTCCAAATGGGTTCTAACCTGCTCCATAGCGCTGACGTGGCAATGCCACGGTGACACCTACGTGTCAGTGGAATCCACATGGCAAGCATATATAAAAAATAAAATTGAAAACCATATTTTCTCCTCTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3'
         A A           G          CA         C        C      C              A     C         CA  T                               GC     A       C      A     C    A A    C    C   -   A     A  G  --      TAT        A    -     C                AG  AGAC    AAAAAG
GAGTGAAGT C TGGGCGGTCCC AAACTTGTGC  GTGTGTCAT TAGGTCCC GAACTC TAAAATGCATTTTT GGTCC TGAACTTGT  TG GTGTCATATAGGTCCAAATGGGTTCTAACCT  TCCAT GCGCTGA GTGGCA TGCCA GGTG C CCTA GTGT AGT GGA TCCAC TG CA  AGCATA   AAAAAATA AATT GAAAA CATATTTTCTCCTCTT  AT    AGAA      
||||||||| | ||||||||||| ||||||||||  ||||||||| |||||||| |||||| |||||||||||||| ||||| |||||||||  || |||||||||||||||||||||||||||||||  ||||| ||||||| |||||| ||||| |||| | |||| |||| ||| ||| ||||| || ||  ||||||   |||||||| |||| ||||| ||||||||||||||||  ||    ||||      A
CTCACTTCA G GTTCGTCAGGG TTTGAACACG  CACACAGTA ATCCAGGG TTTGAG GTTTTACGTAAAAG CCAGG GCTTGAACA  AC CACAGTATATCCAGGTTTGTTCGAGGTTGGA  AGGTA CGCGACT CACCGT ACGGT CCAT G GGAT CATA TCA CCT GGGTG AC GT  TTGTAT   TTTTTTAT TTAA CTTTT GTATAAAAGAGGAGAG  TG    TCTT      
         C C           A          AC         A        A      A              C     A         AA  C                               GA     -       A      -     A    C C    A    A   G   -     C  A  CA      -CT        A    T     T                -A  -GAA    AAAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End