SE2620330

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7298
  • Oryza sativa
  • SE2620330
  • Mutator
  • M87
  • Chr04:21638534-21639070
  • GAGTAAAGT
  • GAGTAAAGTGTACGGGCGGTCCTTAAACTTGTAGTGGTGTGTCATATAGGTCTCTAAACTCTCAAAATGTATATCCAAGTCTCAGAACTTGTCATGGTGTGTCATCTAGGTGCCAAATCGCCACAACCCCTTCAGGATCCTACGTGGCGTTGATGTGGCATGCCACACGGAATGACGTGGCATCATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
            CG                    TGG                                        A                T                G        C    A      C  G                               C   -A       GCA         -  GACAAATGGGTCCCATTTAAAATTTTTCCTTTATCTTTTTTCTTCTTTTTTTCCCATTTCTTCTCCTTTCTCTGTG
GAGTAAAGTGTA  GGCGGTCCTTAAACTTGTAG   TGTGTCATATAGGTCTCTAAACTCTCAAAATGTATATCCA GTCTCAGAACTTGTCA GGTGTGTCATCTAGGT CCAAATCG CACA CCCCTT AG ATCCTACGTGGCGTTGATGTGGCATGCCACA GGA  TGACGTG   TCATTTTGA CT                                                                            
||||||||||||  ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||| |||||| || ||||||||||||||||||||||||||||||| |||  |||||||   ||||||||| ||                                                                             
CTCATTTCACGT  CCGCCAGGAATTTGAACATC   ACACAGTATATCCAGGGATTTGAGAGTTTTACGTATAGGT CAGAGTCTTGAACAGT TCACATAGTAGATCCA GGTTTAGC GTGT GGGGAG TC TAGGATGCACCGCAACTACACTGTACGGTGT CCT  ACTGCAC   AGTAAAAGG AA                                                                            
            AA                    TTA                                        C                T                G        T    A      A  G                               A   GC       ---         A  AAAAGAAAAGAAAAAGAAAAAGAAAAAGAAGCAAAAGAAGAGTAAGAAGAAAAAAAAAGGAAAGAAGACGAGCCCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End