SE2620331

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7299
  • Oryza sativa
  • SE2620331
  • Mutator
  • M89
  • Chr03:14670621-14671048
  • GAGTAAATT
  • GAGTAAATTTCATAAAACTACAGATACTATGACCAAATTATCACAAAACTACAGATTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                       A  CTA                               CTCAG                       A                     A  C    A  ATG             CTA           ACTAAA                --------        A  AATTTAATCACAAA   - TAATGTTTATAGC
GAGTAAATTTCATAAAACTACAG TA   TGACCAAATTATCACAAAACTACAGATTTAA     TGTATCACAAAACTACACATTTA CACCAAATTTATCACAAAACT CA ATTT AG   AAGTGTCACAAAA   CATGTTTAGTA      TTATCATAAAACTATA        GGTTTAGA CC              GTA A             
||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||   |||||||||||||   |||||||||||      ||||||||||||||||        |||||||| ||              ||| |             T
CTCATTTAAAGTGTTTTGATGTC AT   ACTGGTTTAATAGTGTTTTGATGTCTAAATT     ACATAGTGTTTTGATGTGTAAAT GTGGTTTAAATAGTGTTTTGA GT TAAA TC   TTCATAGTGTTTT   GTATAAATTAT      AATAGTGTTTTGATGT        TCAAATTT GG              TCG G             
                       C  AAA                               CCTCA                       C                     C  C    A  CAA             TAC           AACTTG                TGAAAACC        A  ------------GA   T GTAACAATACACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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