SE2620332

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7300
  • Oryza sativa
  • SE2620332
  • Mutator
  • M89
  • Chr04:4538357-4538877
  • GAGTAAATT
  • GAGTAAATTTCATAAAATTA

Secondary structure and sequence

TSD    TIR
5'



3'
          C         CATA  C   A  C   C               T      TAA   A   CAC             C     T           C       C          C     A   C      C  CAT        T                   T     ATA    -     ATCACAAAACTATAGGTTTAGTGTCTTCATTATTACAAAACTATAGATTTTGCTAAAACCTATAGTTTT
GAGTAAATTT ATAAAATTA    TA TTT CA GAT TATCACAAAACTATA ATTTAA   CTT TTT   AAAACTACAGATT AATGT TTTGTTTATCA AAAACTA AGGTACTTTG ACAAT TAT ACAAAA TA   ATTTAAGA CTTGTTTCACAAAACTATA ATTTA   TCTT TATTT                                                                     
|||||||||| |||||||||    || ||| || ||| ||||||||||||||| ||||||   ||| |||   ||||||||||||| ||||| ||||||||||| ||||||| |||||||||| ||||| ||| |||||| ||   |||||||| ||||||||||||||||||| |||||   |||| |||||                                                                     G
CTCATTTAAA TGTTTTGAT    AT AAA GT TTA ATAGTGTTTTGATGT TAAATT   GAA AAA   TTTTGATGTCTAA TTATA AGGCAAATAGT TTTTGAT TCCATGAAAC TGTTA ATA TGTTTT AT   TAAATTCT GAACAAAGTGTTTTGATAT TAAAT   CACA AAGCA                                                                     
          A         ATCC  A   C  A   A               C      CTC   C   ATA             A     C           A       A          A     G   A      A  ATC        T                   C     ---    A     AATAGTGTCTTGATGTGTAAATCACAGAAGTAAATAGTATTTTGATATTTAAATCACAGAAATAATAGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End