Plant MITE

SE2620333

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7301
Oryza sativa
SE2620333
Mutator
M90
Chr11:6748302-6748846
GAGAAAATT
GAGAAAATTCCCTATCTAGCATAAAAAAAAGTTGCTCTTCCCTCTATAGCACCCAAACTTCAAAAGTTCCCAATATAGTCACTTCTAAAATTTTCCTTCCCTATGTAGCACTTCCGTTAGTTTTTATACTTGACGGTGTTAACTAGCGGGAGAAAAGACGGTTTTGCCCTTCTTTAGTTTTCAGACTTGCCCGTACATGATCGTTGGT

Secondary structure and sequence

TSD TIR

5'

3'

                      A                              C      C          A  A   T                                   C                                                                            C         C   G  ATTTTAGAC     TTCTCTTGATTTAACGTAGCACTGCAAATATAACATGTCAATCCACTCTTTTGAA
GAGAAAATTCCCTATCTAGCAT AAAAAAAGTTGCTCTTCCCTCTATAGCACC AAACTT AAAAGTTCCC AT TAG CACTTCTAAAATTTTCCTTCCCTATGTAGCACTTC GTTAGTTTTTATACTTGACGGTGTTAACTAGCGGGAGAAAAGACGGTTTTGCCCTTCTTTAGTTTTCAGACTTGCC GTACATGAT GTT GT         GTGCT                                                       
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||         |||||                                                        
CTCTTTTAAGGGATAGATCGTA TTTTTTTCAACGAGAAGGGAGATATCGTGG TTTGAA TTTTCAAGGG TA ATC GTGAAGATTTTAAAGGGAAGGGATACATCGTGAAG CAATCAAAAATATGAACTGCCACAATTGATCGCCCTCTTTTCTGCCAAAACGGGAAGAAATCAAAAGTCTGAACGG CATGTACTA CAA CA         TAATT                                                       
                      G                              A      T          A  G   C                                   A                                                                            A         -   G  --------A     AATGAATTCAATTAATTACTGTTCACTTTGGTGTCCTCCTATTAATAATAATAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620333

GAGAAAATTCCCTATCTAGCATAAAAAAAAGTTGCTCTTCCCTCTATAGCACCCAAACTTCAAAAGTTCCCAATATAGTCACTTCTAAAATTTTCCTTCCCTATGTAGCACTTCCGTTAGTTTTTATACTTGACGGTGTTAACTAGCGGGAGAAAAGACGGTTTTGCCCTTCTTTAGTTTTCAGACTTGCCCGTACATGATCGTTGGTATTTTAGACGTGCTTTCTCTTGATTTAACGTAGCACTGCAAATATAACATGTCAATCCACTCTTTTGAAAAATAATAATAATTATCCTCCTGTGGTTTCACTTGTCATTAATTAACTTAAGTAATTAATAACGAACATCATGTACAGGCAAGTCTGAAAACTAAAGAAGGGCAAAACCGTCTTTTCTCCCGCTAGTTAACACCGTCAAGTATAAAAACTAACAGAAGTGCTACATAGGGAAGGGAAATTTTAGAAGTGCCTAGATAGGGAACTTTTTAAGTTTAGGTGCTATAGAGGGAAGAGCAACTTTTTTTGATGCTAGATAGGGAATTTTCTC

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