SE2620334

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7302
  • Oryza sativa
  • SE2620334
  • Mutator
  • M90
  • Chr07:11786312-11786697
  • GAGAAAATT
  • GAGAAAATTCCCTATGTAGCATCAAAAAAAGTTGCTCTTCCCTCTATAGCACTCAAACTTCAAAAATTCCCTATCTAGGCACTTCTAAAATTTTCATTCCCTATGTAGCACTTCCGTTAGTTTTTACACTTGACGGTGTTAACTAGCAGGAGAAAAGGCGGTTTTGCCCTTCTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
               G      C                            C             A                             A  C                                               C                             ATAA   AC   A   AC
GAGAAAATTCCCTAT TAGCAT AAAAAAAGTTGCTCTTCCCTCTATAGCA TCAAACTTCAAAA TTCCCTATCTAGGCACTTCTAAAATTTTC TT CCTATGTAGCACTTCCGTTAGTTTTTACACTTGACGGTGTTAACTAG AGGAGAAAAGGCGGTTTTGCCCTTCTTTA    TCA  ATC TGT  
||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||  ||| |||   
CTCTTTTAAGGGATA ATCGTA TTTTTTTCAATGAGAAGGGAGATATCGT GGTTTGAAGTTTT AAGGGATAGATCCGTGAAGATTTTAAAGG AA GGATACATCGTGAAGGTAATCAAAAATGTGAACTGCCACAATTGATC TCCTCTTTTCTGCCAAAACGGGAAGAAAT    AGT  TAG ACG  
               G      A                            A             C                             G  C                                               A                             CAAA   -C   -   GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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