SE2620335

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7303
  • Oryza sativa
  • SE2620335
  • Mutator
  • M91
  • Chr10:15974508-15975168
  • GAGAAAATA
  • GAGAAAATAGACATTTGGCCACGTTCAAAACACGGTT

Secondary structure and sequence

TSD    TIR
5'



3'
        A                            GCAC  A    C     C       A     A        C   T        C                          G                         T           A   T          A         T   ACCCTTCC    C  - --  GTCGGAGCTCGAGGAAGGTAGGGGCGGCTGGATGGCCGGTAGCGCGGCTAGATCGGCATACGGCGGCGGTAGAACGAGTCCATGGCGTGGAGGCCTGCGCTCCAGCTCGCCATCAGCTACTGCTGCCTCT
GAGAAAAT GACATTTGGCCACGTTCAAAACACGGTT    TA AATG TATCC GAAAATA GTTTC TTAAAATG CAA ATGGAGCG GCGCTCACTGCCACTTTGCCATTTTA TCGTTTTGTGTATTTTCGAAATCAT TTCGCTCCTTC CTG GTGATGAGAC AAATTTCCC TCC        GCGG GG C  GG                                                                                                                                  
|||||||| ||||||||||||||||||||||||||||    || |||| ||||| ||||||| ||||| |||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||||| ||||||||| |||        |||| || |  ||                                                                                                                                  C
CTCTTTTA CTGTAAACCGGTGCAAGTTTTGTGCCGA    AT TTAC GTAGG CTTTTAT TAAAG AATTTTAT GTT TACTTCGC CGCGAGTGGCGGTGAAACGGTAAAAT GGTAAAACACATAAAAGCTTTAGTA AAGTGAGGAGG GGC CACTACTCTG TTTAAAGGG AGG        ACAC AG G  CG                                                                                                                                  
        C                            AGCA  C    T     A       G     C        A   T        A                          A                         C           C   T          C         T   ------CC    -  A CT  CGCCACTCGTCCCTGTGTTGCGACGGGCACCCCAGCTCGCCGCCACCGATCCCAAAACTCCGCCCGGAGTACCGGAGCGGTCGCCACCTCCGCCCTCCCCCTGCGTTACTCGCAGCCCAAGCGCCTCGAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End