SE2620336

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7304
  • Oryza sativa
  • SE2620336
  • Mutator
  • M13
  • Chr05:7061778-7061932
  • GGGGCTTTT
  • GGGGCTTTTAACTATTTGCCACTCTTACGGATGTTGCTTAATGATTTGCCACTAGGCCCACATGTCATAGACACATG

Secondary structure and sequence

TSD    TIR
5'



3'
    CT                    ACG     T  --               TAG    ACA     TA    CA  AGG
GGGG  TTTAACTATTTGCCACTCTT   GATGT GC  TTAATGATTTGCCAC   GCCC   TGTCA  GACA  TG   
||||  ||||||||||||||||||||   ||||| ||  |||||||||||||||   ||||   |||||  ||||  ||    
CCCT  AAATTGATAAACGGTGAGAA   CTGTA CG  AATTGCTAAACGGTG   TGGG   ACAGT  CTGT  AC   
    TT                    -CA     C  TT               ---    ---     TA    AC  CCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End