Plant MITE

SE2620339

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7307
Oryza sativa
SE2620339
Mutator
M92
Chr06:17614057-17614685
GGCAAAATT
GGCAAAATTTGCTACAGGATACTCAAAAAAACGTGTAATTGGTTGGGAGACACCGCAAAAACGTGACACGGCTGATGGACACTACAAAAATTATGTAATTGGCTATAGGACAC

Secondary structure and sequence

TSD TIR

5'

3'

                              AC             G                               G           A  A                         GCAATATTTTAAATTTTTGGGTCAAAAGAGGTGAGAAATTTTTCGAAATGGCGAGATTGCCGCTGGCGCCATCTTCCCCTACCCGAAATCACAAAATTTTGTAGCTGGGAGCAGCCGCTGGCGTGATAGCTGGCGGCGCCCGCGTGGAAGGAGCGGCAGACAGCGCGGAGGCGGACGTGGTCGGGGAGGGACGAGAG
GGCAAAATTTGCTACAGGATACTCAAAAAA  GTGTAATTGGTTG GAGACACCGCAAAAACGTGACACGGCTGATG ACACTACAAAA TT TGTAATTGGCTATAGGACACTGAAG                                                                                                                                                                                                     
||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||                                                                                                                                                                                                      
CCGTTTTAAACGATGTCCTGTGAGTTTTTT  CATATTAACCGAC CTCTGTGGTGTTTTTGCACTGTGCCGACTAC TGTGATGTTTT AA ACATTAACCGATATCCTGTGTTTTC                                                                                                                                                                                                     
                              -A             A                               A           A  C                         TCCACTCTTTAAAAAACTTTATCGCTCTAACGGGGACTGTGCCTCGCGGCGTTGGTGGAGCGCGTGCCGGTTGAGGACGAGCGCGAGGTACGGCGGCGGCGACGATGGTTGCTGTTGCTCCTCCTACCGCCGCCACGTCGTCGGTAGTAGTGGCACCGCCCGAGAGCCGCCTGGACGATCCCGAGTACGAGGAGGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620339

GGCAAAATTTGCTACAGGATACTCAAAAAAACGTGTAATTGGTTGGGAGACACCGCAAAAACGTGACACGGCTGATGGACACTACAAAAATTATGTAATTGGCTATAGGACACTGAAGGCAATATTTTAAATTTTTGGGTCAAAAGAGGTGAGAAATTTTTCGAAATGGCGAGATTGCCGCTGGCGCCATCTTCCCCTACCCGAAATCACAAAATTTTGTAGCTGGGAGCAGCCGCTGGCGTGATAGCTGGCGGCGCCCGCGTGGAAGGAGCGGCAGACAGCGCGGAGGCGGACGTGGTCGGGGAGGGACGAGAGGTGGAGGAGCATGAGCCCTAGCAGGTCCGCCGAGAGCCCGCCACGGTGATGATGGCTGCTGCACCGCCGCCATCCTCCTCGTTGTCGTTGGTAGCAGCGGCGGCGGCATGGAGCGCGAGCAGGAGTTGGCCGTGCGCGAGGTGGTTGCGGCGCTCCGTGTCAGGGGCAATCTCGCTATTTCAAAAAATTTCTCACCTCTTTTGTGTCCTATAGCCAATTACACAAATTTTGTAGTGTACATCAGCCGTGTCACGTTTTTGTGGTGTCTCACAGCCAATTATACATTTTTTGAGTGTCCTGTAGCAAATTTTGCC

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