SE2620340

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7308
  • Oryza sativa
  • SE2620340
  • Mutator
  • M92
  • Chr11:4254445-4254912
  • GGCAAATTT
  • GGCAAATTTTGCTACAGGACACCTAAAATTTGTGTAATTTGCTGATAGACATCGAAAAAACGTGTCATGGCTGAAAGACATTCTAAAAAACTGGTAATTTGCTATAGGACACTTTCGGCTCAATTGAAGGGATGGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
      T                                              GAA         C                        C            AT                     A     T     CCAA                -   --  -     CA ATGCTTCAAACATGGTGTTAGAGTAAAAATTAAGAAATTTTCCAACTCTAAATTTTCCATAG
GGCAAA TTTGCTACAGGACACCTAAAATTTGTGTAATTTGCTGATAGACATC   AAAACGTGT ATGGCTGAAAGACATTCTAAAAAA TGGTAATTTGCT  AGGACACTTTCGGCTCAATTG AGGGA GGATT    AAAAAAGACGAGAATG CCC  CT CTGGC  C                                                              
|||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||| ||||| |||||    |||||||||||||||| |||  || |||||  |                                                               
CCGTTT AAACGATGTCCTGTGGGTTTTAAACACATTAAACGACTATCTGTAG   TTTTGCACA TACCGACTTTCTGTGAGATTTTTT ACCATTAAACGA  TCCTGTGAAGGCCGAGTTAGC TCTCT TTTAA    TTTTTTCTGTTCTTAC GGG  CC AGTTT  T                                                              
      T                                              GAC         A                        T            CC                     C     C     AAAG                T   AT  T     -- CGAAAAACTCGGCTATGATCTCACTTTTACTTTATACCACATACGATCACTACATGAAACCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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