SE2620341

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7309
  • Oryza sativa
  • SE2620341
  • Mutator
  • M93
  • Chr03:29323108-29323796
  • GAGTAAATT
  • GAGTAAATTTCATAAAACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
              A     CACC                          A  -T  A    AA     CA          CAAA      A   C                    -------CC     CCAAATTGACATACTCCTATATCAAAATTTTAAAAAGATTTACTTACATGGATCTAACATTTATATGATGGATAAATCTCTACTATTATAAAAATTGAAGATGTTTTTGCCGATACTTTTGGTACGTCATTCGTATATGAATCGGTTTTCAAGTTCGTTCGCTTTTGGAAATACAGAAGGAGTCGTATAAAAAATCTCTTTAAAAATTTCGCATGCTAA
GAGTAAATTTCATA AACCC    TATTATGGTCTAAGTTGCACAGAACC CA  GG TTTT  CATGT  CACATAACCT    TATTAT GTC TAAAGTTTCACAAAACCACG         GTTAA                                                                                                                                                                                                                           
|||||||||||||| |||||    |||||||||||||||||||||||||| ||  || ||||  |||||  ||||||||||    |||||| ||| ||||||||||||||||||||         |||||                                                                                                                                                                                                                           C
CTCATTTAAAGTGT TTGGG    ATAATACCAGATTCAACGTGTTTTGG GT  CC AAAA  GTACA  GTGTATTGGA    ATAATA CGG ATTTCAAAGTGTTTTGGTGC         TAAAG                                                                                                                                                                                                                           
              A     ATCC                          -  TT  -    CC     CC          ATCC      C   T                    TAAAACTAG     TTGTAACTAAATGGTGTAAACAATCAAGATGTTAGTGTAGAGTTTAAATATTAAATGATCTTTTTTACGGGCACGCAACGTTGCCTACTTCCGATAAAATTAAAATAATAATAATATATGAGATCAAATCAATTCTACTTTTAGTGAGACTCTTAAGAGCACCTATATATAAAAAAAGATCTTTTAGTACTCGACGTTAATCCTCAGGTTAGTAGAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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