SE2620342

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7310
  • Oryza sativa
  • SE2620342
  • Mutator
  • M93
  • Chr09:7917405-7917760
  • GAGTAAATT
  • GAGTAAATTTCACTTAACCT

Secondary structure and sequence

TSD    TIR
5'



3'
          -------    TA    TTAGGT                            T                   T     A   G       A   A   A    C   CA        A       --      AAA  --AC    CAAA    T       TTATC   -   A   A
GAGTAAATTT       CACT  ACCT      GTTGTGGTCTAAGTTGCACAAAACCACA GGGTTTTGGCACGTGACAC TAACC CCA GTATTAT GCT TAA GTTT ACA  ACCACACT TTGATCA  TTTATA   TC    ATCA    TTTA GAGTTTT     CAT CAT TAA 
||||||||||       ||||  ||||      |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| ||||||| ||| ||| |||| |||  |||||||| |||||||  ||||||   ||    ||||    |||| |||||||     ||| ||| ||| T
CTCATTTAAA       GTGG  TGGA      TAATACCAGGTTCAACGTGTTTTGGTGT CCTAAAACCGTGTACTGTG ATTGG GGT CATAATA CGG ATT CAAA TGT  TGGTGTGG AATTGGT  AAATGT   AG    TAGT    AAAT TTCAAAA     GTA GTA ATT 
          ATAGTTT    --    ------                            C                   T     -   A       C   G   C    T   TC        C       TA      ATG  GATA    TTCA    T       TCAAT   A   C   G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End