Plant MITE

SE2620343

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7311
Oryza sativa
SE2620343
Mutator
M93
Chr12:19654417-19654788
GAGTAAATT
GAGTAAATTTCATAAAACCCCACCTATTATGGTCCAAGTTGCACAAAATCACATGAATTTTGGTCTGTGACATATAACCCTAGGTTTTATGGTCCTAAAGTTTCACAAAACCACATTATTGATCATTTTGACTTC

Secondary structure and sequence

TSD TIR

5'

3'

                                 C         C         T AA       C    A           A   T       C     G           C     A             ----    AATTTACCACA   T   GTTCTACGATCACATGTCAAATTTATGAGGATTTT
GAGTAAATTTCATAAAACCCCACCTATTATGGT CAAGTTGCA AAAATCACA G  TTTTGGT TGTG CATATAACCCT GGT TTATGGT CTAAA TTTCACAAAAC ACATT TTGATCATTTTGA    CTTC           CTT TAA                                   
||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |  ||||||| |||| ||||||||||| ||| ||||||| ||||| ||||||||||| ||||| |||||||||||||    ||||           ||| |||                                   A
CTCATTTAAAGTATTTTGGGGTGGATAATACCG GTTCAACGT TTTTGGTGT C  AAAACCG GCAC GTGTATTGGGA CCA AATACCA GATTT AAAGTGTTTTG TGTGA AATTGGTAAAACT    GAGG           TAG TTT                                   
                                 A         A         C CC       T    C           C   T       T     G           A     C             ATAT    --------ATA   -   TAACTTTTTTCACCTACATTGTAAATAAACTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620343

GAGTAAATTTCATAAAACCCCACCTATTATGGTCCAAGTTGCACAAAATCACATGAATTTTGGTCTGTGACATATAACCCTAGGTTTTATGGTCCTAAAGTTTCACAAAACCACATTATTGATCATTTTGACTTCAATTTACCACACTTTTAAGTTCTACGATCACATGTCAAATTTATGAGGATTTTATTCATCAAATAAATGTTACATCCACTTTTTTCAATTTTGATATAGGAGTATATCAAAATGGTTAACAGTGTAGTTTTGTGAAAGTTTAGTACCATAATACCCAGGGTTATGTGCCACGTGCCAAAACCCCTGTGGTTTTATGCAACTTGAGCCATAATAGGTGGGGTTTTATGAAATTTACTC

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